BioSCape Data Skills Workshop 2024

07 October - 09 October Capetown, South Africa
BioSCape Data Skills Workshop - From the Field to the Image.

About BioSCape Data Skills Workshop

This workshop will equip participants with the skills to find, subset, and visualize the various BioSCape field and airborne (imaging spectroscopy and full-waveform LiDAR) data sets as well as corresponding NASA Earthdata satellite datasets. Participants will learn data skills through worked examples in terrestrial and aquatic ecosystems, including wrangling LiDAR data, performing band math calculations, calculating spectral diversity metrics, machine learning and image classification, and mapping functional traits. The workshop format is a mix of expert talks and interactive coding notebooks and will be run through the BioSCape cloud computing environment.

2024 Event Starts In:

Days Hours Minutes Seconds

Information for Participants

BioSCape Data Skills Workshop will take place in October 7-9, 2024 (in-person).

Host

NASA's Oak Ridge National Laboratory Distributed Active Archive Center (ORNL DAAC), in close collaboration with BioSCape, the South African Environmental Observation Network (SAEON), the University of Wisconsin Madison (Phil Townsend), The Nature Conservancy (Glenn Moncrieff), the University of California Merced (Erin Hestir), the University of Cape Town (Jasper Slingsby), Jet Propulsion Laboratory (Kerry Cawse-Nicholson), and UNESCO.
NASA Earthdata
BioSCape
ORNL DAAC

Schedule

All times listed below are UTC +2 (South Africa Time).

7:45 - 8:00

COFFEE

8:00 - 8:05

Welcome

Introductions and review of agenda

8:05 - 8:35

BioSCape Overview

BioSCape airborne and field datasets

8:35 - 8:45

NASA Earthdata

Discovery and access of NASA Earth data

8:45 - 9:05

Earthdata Search

Tutorial

9:05 - 9:20

BioSCape Cloud

Science Managed Cloud Environment and GitHub

9:20 - 10:10

JupyterHub Basics

Tutorial

10:10 - 10:40

BREAK

10:40 - 10:55

BioSCape Field Data

Vegetation plots

10:55 - 11:20

BioSCape Airborne Data

AVIRIS-NG, PRISM, HYTES, LVIS

11:20 - 11:50

Highly dimensional imaging spectroscopy data

xarray and AVIRIS-NG data cubes

11:50 - 12:10

OPEN Q & A

12:10 - 13:25

LUNCH

13:25 - 14:25

AVIRIS-NG and field data

Tutorial

14:25 - 14:40

PRISM data

Tutorial

14:40 - 15:10

BREAK

15:10 - 15:25

Post-fire vegetation growth with LVIS and GEDI

LVIS and GEDI full waveform lidar data

15:25 - 16:25

LVIS data

Tutorial

16:25 - 17:00

OPEN DISCUSSION

7:45 - 8:00

COFFEE

8:00 - 8:15

HyTES and ECOSTRESS TIR data

What can thermal data tell us about biodiversity

8:15 - 9:15

HyTES data

Tutorial

9:15 - 9:30

Ocean color with PRISM and PACE

What does ocean color tell us about biodiversity

9:30 - 10:30

Ocean color with PRISM and PACE

Tutorial

10:30 - 11:00

BREAK

11:00 - 11:20

Spectral diversity

What is spectral diversity and what can it tell us

Lead(s)

11:20 - 12:20

Spectral diversity with AVIRIS-NG

Tutorial

12:20 - 13:35

LUNCH

13:35 - 13:55

Mapping aliens with machine learning and AVIRIS-NG

Complexities of mapping aliens and why imaging spectroscopy helps

13:55 - 14:55

Mapping aliens with machine learning and AVIRIS-NG

Tutorial

14:55 - 17:00

OPEN DISCUSSION

7:45 - 8:00

COFFEE

8:00 - 8:30

Spectroscopy for plant traits

What kinds of things does linking field and airborne spectra allow us to understand

8:30 - 9:30

Spectroscopy for plant traits

Tutorial

9:30 - 9:50

BREAK

9:50 - 10:10

Functional trait data

Demo a PLSR and its outputs

10:10 - 11:10

Functional trait mapping

Tutorial

11:10 - 11:40

OPEN DISCUSSION

11:40 - 12:00

FEEDBACK

12:00 - 13:00

LUNCH


Meet the team

The people on this page have helped organize the workshop. You'll find a few specializations listed per person if you're wondering who to reach out to during the event!
Alexey Shiklomanov
Research Scientist
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Anabelle Cardoso
Researcher
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Erin Hestir
Associate professor
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Evan Lang
Scientific Software Engineer
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Glenn Moncrieff
Geospatial Data Scientist
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Henry Frye
Postdoctoral researcher
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Jasper Slingsby
Senior Lecturer
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Kerry Cawse-Nicholson
Scientist
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Kyle Kovach
Postdoctoral researcher
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Michele Thornton
Geospatial/Technical Professional
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Phil Townsend
Professor
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Rupesh Shrestha
Remote Sensing Scientist
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